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Journal ArticleOpen Access

Hidden Markov model and Chapman Kolmogrov for protein structures prediction from images

Author Affiliations
East West University, Chittagong University of Engineering & Technology, Tanta University, Universidade do Porto, ...
Published InComputational Biology and Chemistry
Year2017
Citations27

Abstract

Protein structure prediction and analysis are more significant for living organs to perfect asses the living organ functionalities. Several protein structure prediction methods use neural network (NN). However, the Hidden Markov model is more interpretable and effective for more biological data analysis compared to the NN. It employs statistical data analysis to enhance the prediction accuracy. The current work proposed a protein prediction approach from protein images based on Hidden Markov Model and Chapman Kolmogrov equation. Initially, a preprocessing stage was applied for protein images' binarization using Otsu technique in order to convert the protein image into binary matrix. Subsequently, two counting algorithms, namely the Flood fill and Warshall are employed to classify the protein structures. Finally, Hidden Markov model…
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