A prior knowledge based approach to infer gene regulatory networks

In this research, we use S-System model and Differential Evolution based inference method to capture cellular dynamics using available mutual interaction information among genes. We propose a new fitness function, effectively incorporating a priori information, which guides the inference method to deduce correct skeletal structure of the network with more accurate parameter values. Proposed fitness function mirrors user's confidence in the validity of knowledge and helps in narrowing down the search range of the model parameters for highly confident knowledge. We investigate the potency of the method in terms of quality of data and required data size. The proposed method is shown to perform better in inherent noisy data and in presence of small number of time-dynamics data. We also…