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31+ results
Field: Computational biology

Meta-analysis of 32 genome-wide linkage studies of schizophrenia

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Mandy Ng, Douglas F. Levinson, Stephen V. Faraone, Brian K. Suarez et al.

Journal: Molecular PsychiatryYear: 2008
Citations: 280

A genome scan meta-a nalysis (GSMA) was carried out on 32 independent genome-wide linkage scan analyses that included 3255 pedigrees with 7413 genotyped cases affected with schizophrenia (SCZ) or related disorders. The primary GSMA divided the autosomes into 120 bins, rank-ordered the bins within ea...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

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Patrick Munk, Christian Brinch, Frederik Duus Møller, Thomas Nordahl Petersen et al.

Journal: Nature CommunicationsYear: 2022Citations: 273

Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop sustainable strategies combatting this threat. Here, we use metagenomic sequencing to analyse ARGs in 7...

Physical SciencesEnvironmental SciencePollutionOpen Access
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Potential of Plant Bioactive Compounds as SARS-CoV-2 Main Protease (Mpro) and Spike (S) Glycoprotein Inhibitors: A Molecular Docking Study

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Trina Ekawati Tallei, Sefren Geiner Tumilaar, Nurdjannah Jane Niode, Fatimawali Fatimawali et al.

Journal: ScientificaYear: 2020Citations: 272

Since the outbreak of the COVID-19 (coronavirus disease 19) pandemic, researchers have been trying to investigate several active compounds found in plants that have the potential to inhibit the proliferation of SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2). The present study aimed to ...

Physical SciencesComputer ScienceComputational Theory and MathematicsOpen Access
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Genome-wide association meta-analysis of human longevity identifies a novel locus conferring survival beyond 90 years of age

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Joris Deelen, Marian Beekman, Hae‐Won Uh, Linda Broer et al.

Journal: Human Molecular GeneticsYear: 2014Citations: 271

The genetic contribution to the variation in human lifespan is ∼ 25%. Despite the large number of identified disease-susceptibility loci, it is not known which loci influence population mortality. We performed a genome-wide association meta-analysis of 7729 long-lived individuals of European descent...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

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Alexandre F. Aissa, Abul Bashar Mir Md. Khademul Islam, Majd Ariss, Cammille C. Go et al.

Journal: Nature CommunicationsYear: 2021Citations: 269

Tyrosine kinase inhibitors were found to be clinically effective for treatment of patients with certain subsets of cancers carrying somatic mutations in receptor tyrosine kinases. However, the duration of clinical response is often limited, and patients ultimately develop drug resistance. Here, we u...

Life SciencesBiochemistry, Genetics and Molecular BiologyCancer ResearchOpen Access
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Safety analysis of a Russian phage cocktail: From MetaGenomic analysis to oral application in healthy human subjects

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Shawna McCallin, Shafiqul Alam Sarker, Caroline Barretto, Shamima Sultana et al.

Journal: VirologyYear: 2013Citations: 264

Phage therapy has a long tradition in Eastern Europe, where preparations are comprised of complex phage cocktails whose compositions have not been described. We investigated the composition of a phage cocktail from the Russian pharmaceutical company Microgen targeting Escherichia coli/Proteus infect...

Physical SciencesEnvironmental ScienceEcology
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Increasing the throughput of sensitive proteomics by plexDIA

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Jason Derks, Andrew Leduc, Georg Wallmann, R. Gray Huffman et al.

Journal: Nature BiotechnologyYear: 2022Citations: 252

Proteomics of small sample sizes using data-independent acquisition methods achieves higher throughput with multiplexing. Current mass spectrometry methods enable high-throughput proteomics of large sample amounts, but proteomics of low sample amounts remains limited in depth and throughput. To incr...

Physical SciencesChemistrySpectroscopyOpen Access
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Isolation and proteomic analysis of the SYP61 compartment reveal its role in exocytic trafficking in Arabidopsis

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Georgia Drakakaki, Wilhelmina van de Ven, Songqin Pan, Yansong Miao et al.

Journal: Cell ResearchYear: 2011Citations: 247

The endomembrane system is a complex and dynamic intracellular trafficking network. It is very challenging to track individual vesicles and their cargos in real time; however, affinity purification allows vesicles to be isolated in their natural state so that their constituent proteins can be identi...

Life SciencesBiochemistry, Genetics and Molecular BiologyCell BiologyOpen Access
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Multiplexed single-cell proteomics using SCoPE2

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Aleksandra A. Petelski, Edward Emmott, Andrew Leduc, R. Gray Huffman et al.

Journal: Nature ProtocolsYear: 2021Citations: 236

Many biological systems are composed of diverse single cells. This diversity necessitates functional and molecular single-cell analysis. Single-cell protein analysis has long relied on affinity reagents, but emerging mass-spectrometry methods (either label-free or multiplexed) have enabled quantifyi...

Physical SciencesChemistrySpectroscopyOpen Access
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Multi-Omics Pipeline and Omics-Integration Approach to Decipher Plant’s Abiotic Stress Tolerance Responses

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Rajib Roychowdhury, Soumya Prakash Das, Amber Gupta, Parul Parihar et al.

Journal: GenesYear: 2023Citations: 234

The present day's ongoing global warming and climate change adversely affect plants through imposing environmental (abiotic) stresses and disease pressure. The major abiotic factors such as drought, heat, cold, salinity, etc., hamper a plant's innate growth and development, resulting in reduced yiel...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Application of CRISPR/Cas9 Genome Editing Technology for the Improvement of Crops Cultivated in Tropical Climates: Recent Progress, Prospects, and Challenges

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Effi Haque, Hiroaki Taniguchi, Md Mahmudul Hassan, Pankaj Bhowmik et al.

Journal: Frontiers in Plant ScienceYear: 2018Citations: 231

The world population is expected to increase from 7.3 to 9.7 billion by 2050. Pest outbreak and increased abiotic stresses due to climate change pose a high risk to tropical crop production. Although conventional breeding techniques have significantly increased crop production and yield, new approac...

Life SciencesBiochemistry, Genetics and Molecular BiologyMolecular BiologyOpen Access
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Public human microbiome data are dominated by highly developed countries

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Richard J. Abdill, Elizabeth M. Adamowicz, Ran Blekhman

Journal: PLoS BiologyYear: 2022Citations: 214

The importance of sampling from globally representative populations has been well established in human genomics. In human microbiome research, however, we lack a full understanding of the global distribution of sampling in research studies. This information is crucial to better understand global pat...

Life SciencesBiochemistry, Genetics and Molecular BiologyMolecular BiologyOpen Access
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Nanozyme-based electrochemical biosensors for disease biomarker detection

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Rabbee G. Mahmudunnabi, Fatema Zerin Farhana, Navid Kashaninejad, Shakhawat H. Firoz et al.

Journal: The AnalystYear: 2020Citations: 212

In recent years, a new group of nanomaterials named nanozymes that exhibit enzyme-mimicking catalytic activity has emerged as a promising alternative to natural enzymes. Nanozymes can address some of the intrinsic limitations of natural enzymes such as high cost, low stability, difficulty in storage...

Physical SciencesMaterials ScienceMaterials ChemistryOpen Access
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Nucleic acid amplification: Alternative methods of polymerase chain reaction

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Md. Fakruddin, KhanjadaShahnewaj Bin Mannan, Abhijit Chowdhury, ReazMohammad Mazumdar et al.

Journal: Journal of Pharmacy And Bioallied SciencesYear: 2013Citations: 205

Nucleic acid amplification is a valuable molecular tool not only in basic research but also in application oriented fields, such as clinical medicine development, infectious diseases diagnosis, gene cloning and industrial quality control. A comperehensive review of the literature on the principles, ...

Physical SciencesEngineeringBiomedical EngineeringOpen Access
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Construction of an enzyme-free concatenated DNA circuit for signal amplification and intracellular imaging

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Huimin Wang, Chunxiao Li, Xiaoqing Liu, Xiang Zhou et al.

Journal: Chemical ScienceYear: 2018Citations: 203

A rationally and modularly engineered two-layered CHA–HCR circuit was constructed for amplified biosensing and bioimaging with high performance.

Life SciencesBiochemistry, Genetics and Molecular BiologyMolecular BiologyOpen Access
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