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Field: Environmental DNA in Biodiversity Studies

The need to step-up monitoring of Asian bears

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David L. Garshelis, Karine E. Pigeon, Mei-Hsiu Hwang, Michael F. Proctor et al.

Journal: Global Ecology and Conservation
Year: 2022
Citations: 37

Many wildlife species are threatened in Asia, including the five species of terrestrial bears (Asiatic black, Ursus thibetanus; brown, U. arctos; sloth, Melursus ursinus; sun, Helarctos malayanus; giant panda, Ailuropoda melanoleuca): many populations of these bears are thought to be declining or im...

Physical SciencesEnvironmental ScienceEcologyOpen Access
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Characterisation of the tongue worm, Linguatula serrata (Pentastomida: Linguatulidae), in Australia

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Shokoofeh Shamsi, Diane P. Barton, Xiaocheng Zhu, David Jenkins

Journal: International Journal for Parasitology Parasites and WildlifeYear: 2020Citations: 32

We describe adult males and females and a nymph belonging to Linguatula serrata in Australia, based on light and scanning electron microscopies. In addition, 18S and Cox1 sequence data have also been provided and were compared with similar sequences in GenBank. Our specimens had identical 18S sequen...

Physical SciencesEnvironmental ScienceEcologyOpen Access
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Metagenomic analysis using 16S ribosomal RNA genes of a bacterial community in an urban stream, the Tama River, Tokyo

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Md. Shaheed Reza, Nanami Mizusawa, Ayaka Kumano, Chiharu Oikawa et al.

Journal: Fisheries ScienceYear: 2018Citations: 31

In an effort to determine genus- or species-level taxonomic profiles and diversity of bacterial consortia in the Tama River around urban Tokyo, next-generation sequencing technology targeting a 16S ribosomal RNA (rRNA) gene amplicon was employed. Metagenomic analysis performed by an Ion Personal Gen...

Physical SciencesEnvironmental ScienceEcology
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Effect of Long-Term Pesticides and Chemical Fertilizers Application on the Microbial Community Specifically Anammox and Denitrifying Bacteria in Rice Field Soil of Jhenaidah and Kushtia District, Bangladesh

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Mizanur Rahman, Kamrun Nahar, Md. Meraj Ali, Nasrin Sultana et al.

Journal: Bulletin of Environmental Contamination and ToxicologyYear: 2020Citations: 30

In this study, we investigated the effect of long-term pesticides and chemical fertilizers application on the microbial communities specifically anammox and denitrification bacteria in rice field soils. The abundances of microbial communities (16S rDNA), anammox (hszB), and denitrification (narG, ni...

Physical SciencesEnvironmental SciencePollution
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Alarming decline of freshwater trigger species in western Mediterranean key biodiversity areas

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Joana Garrido Nogueira, Ronaldo Sousa, Hassan Benaissa, Geert De Knijf et al.

Journal: Conservation BiologyYear: 2021Citations: 27

Theidentification of key biodiversity areas (KBA) was initiated by the International Union for Conservation of Nature in 2004 to overcome taxonomic biases in the selection of important areas for conservation, including freshwater ecosystems. Since then, several KBAs have been identified mainly based...

Physical SciencesEnvironmental ScienceNature and Landscape ConservationOpen Access
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An optimised protocol for barcoding museum collections of decapod crustaceans: a case-study for a 10–40-years-old collection

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Dario Zuccon, Julien Brisset, Laure Corbari, Nicolas Puillandre et al.

Journal: Invertebrate SystematicsYear: 2012Citations: 24

The sequencing of the crustacean collection of the MNHN, Paris, constitutes a promising yet very challenging barcoding project. For the collection’s crustacean specimens preserved in ethanol, some of which were collected up to 40 years ago, the conventional COI barcoding procedure of amplification w...

Life SciencesBiochemistry, Genetics and Molecular BiologyMolecular Biology
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Species conservation profiles of cave-dwelling arthropods from Azores, Portugal

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Paulo A. V. Borges, Lucas Lamelas-López, Isabel R. Amorim, Anja Danielczak et al.

Journal: Biodiversity Data JournalYear: 2019Citations: 21

Azorean volcanic cave biodiversity is under considerable pressure due to ongoing threats of pollution, land use change, touristic activities or climate change. In this contribution, we present the IUCN Red List profiles of 15 cave-adapted arthropod species, endemic to the Azorean archipelago, includ...

Physical SciencesEarth and Planetary SciencesPaleontologyOpen Access
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DNA metabarcoding reveals the significant influence of anthropogenic effects on microeukaryotic communities in urban waterbodies

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Mamun Abdullah Al, Yuanyuan Xue, Peng Xiao, Huihuang Chen et al.

Journal: Environmental PollutionYear: 2021Citations: 20

Biological monitoring and assessment are the first and most fundamental steps towards diagnosing ecological or environmental quality. Increasing anthropogenic impact on urban ecosystems has prompted the development of less expensive and more efficient bioassessment approaches. Generally, a morphospe...

Physical SciencesEnvironmental ScienceEcology
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Genetic homogeneity of the Sedgling <i>Nehalennia speciosa</i> (Odonata: Coenagrionidae) indicates a single Würm glacial refugium and trans‐Palaearctic postglacial expansion

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Rafał Bernard, Markus Heiser, Axel Hochkirch, Thomas Schmitt

Journal: Journal of Zoological Systematics & Evolutionary ResearchYear: 2011Citations: 19

The phylogeographic structures of taiga species often support the hypothesis of East Palaearctic refugia for these taxa, but the phylogeographic structures of northern temperate and southern boreal bog species are still poorly understood. Therefore, we analysed the genetic diversity and differentiat...

Physical SciencesEnvironmental ScienceEcological Modeling
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Microsatellite and mitochondrial DNA analyses reveal no genetic difference between two pufferfish species torafugu Takifugu rubripes and karasu T. chinensis

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Md. Shaheed Reza, Shigeharu Kinoshita, Satoshi Furukawa, Toshitaka Mochizuki et al.

Journal: Fisheries ScienceYear: 2010Citations: 18
Life SciencesBiochemistry, Genetics and Molecular BiologyGenetics
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Molecular and morphological revision of small Myotinae from the Himalayas shed new light on the poorly known genus Submyotodon (Chiroptera: Vespertilionidae)

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Manuel Rüedi, Uttam Saikia, Adora Thabah, Tamás Görföl et al.

Journal: Mammalian BiologyYear: 2021Citations: 17

Abstract The systematics status of the constituent species of the M. mystacinus morphogroup in the Himalayan region has long been marred by uncertainty. Lack of integrative studies combining morphological and genetic data from specimens recently collected in this region has hampered our understandin...

Life SciencesAgricultural and Biological SciencesEcology, Evolution, Behavior and SystematicsOpen Access
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The Amphibian Genomics Consortium: advancing genomic and genetic resources for amphibian research and conservation

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Tiffany A. Kosch, María Torres‐Sánchez, H. Christoph Liedtke, Kyle Summers et al.

Journal: BMC GenomicsYear: 2024Citations: 16

Amphibians represent a diverse group of tetrapods, marked by deep divergence times between their three systematic orders and families. Studying amphibian biology through the genomics lens increases our understanding of the features of this animal class and that of other terrestrial vertebrates. The ...

Physical SciencesEnvironmental ScienceEcologyOpen Access
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A protocol for harvesting biodiversity data from Facebook

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Shawan Chowdhury, Sultan Ahmed, Shofiul Alam, Corey T. Callaghan et al.

Journal: Conservation BiologyYear: 2024Citations: 16

The expanding use of community science platforms has led to an exponential increase in biodiversity data in global repositories. Yet, understanding of species distributions remains patchy. Biodiversity data from social media can potentially reduce the global biodiversity knowledge gap. However, prac...

Physical SciencesEnvironmental ScienceEcological ModelingOpen Access
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AI-informed conservation genomics

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Cock van Oosterhout

Journal: HeredityYear: 2023Citations: 15

Genomic data and Artificial Intelligence (AI) models will start to play an increasingly important role in conservation biology. In a recent study, Wilder et al. (2023) analysed genomic data from 240 mammal species to predict their extinction risk categories in the Red List of the International Union...

Physical SciencesEnvironmental ScienceEcologyOpen Access
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How pondscapes function: connectivity matters for biodiversity even across small spatial scales in aquatic metacommunities

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Barbara Barta, Attila Szabó, Beáta Szabó, Robert Ptáčník et al.

Journal: EcographyYear: 2023Citations: 15

Habitat loss and fragmentation are growing global threats to natural habitats and their networks, posing significant challenges to biodiversity conservation. Globally, ponds are sharply declining in number because their small size makes them highly vulnerable to land use changes. While it is general...

Physical SciencesEnvironmental ScienceEcologyOpen Access
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