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Field: Genetic Mapping and Diversity in Plants and Animals

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

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Keyan Zhao, Chih‐Wei Tung, Georgia C. Eizenga, Mark H. Wright et al.

Journal: Nature Communications
Year: 2011
Citations: 1473

Asian rice, Oryza sativa is a cultivated, inbreeding species that feeds over half of the world's population. Understanding the genetic basis of diverse physiological, developmental, and morphological traits provides the basis for improving yield, quality and sustainability of rice. Here we show the ...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Genome Scan Meta-Analysis of Schizophrenia and Bipolar Disorder, Part II: Schizophrenia

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Cathryn M. Lewis, Douglas F. Levinson, Lesley H. Wise, Lynn E. DeLisi et al.

Journal: The American Journal of Human GeneticsYear: 2003Citations: 1146

Schizophrenia is a common disorder with high heritability and a 10-fold increase in risk to siblings of probands. Replication has been inconsistent for reports of significant genetic linkage. To assess evidence for linkage across studies, rank-based genome scan meta-analysis (GSMA) was applied to da...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Enhancing the rate of genetic gain in public-sector plant breeding programs: lessons from the breeder’s equation

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Joshua N. Cobb, Roselyne U. Juma, P. Biswas, Juan David Arbelaez et al.

Journal: Theoretical and Applied GeneticsYear: 2019Citations: 424

KEY MESSAGE: The integration of new technologies into public plant breeding programs can make a powerful step change in agricultural productivity when aligned with principles of quantitative and Mendelian genetics. The breeder's equation is the foundational application of quantitative genetics to cr...

Life SciencesAgricultural and Biological SciencesPlant ScienceOpen Access
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Diversity of Global Rice Markets and the Science Required for Consumer-Targeted Rice Breeding

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Mariafe Calingacion, Alice G. Laborte, Andrew Nelson, Adoracion P. Resurreccion et al.

Journal: PLoS ONEYear: 2014Citations: 332

With the ever-increasing global demand for high quality rice in both local production regions and with Western consumers, we have a strong desire to understand better the importance of the different traits that make up the quality of the rice grain and obtain a full picture of rice quality demograph...

Life SciencesAgricultural and Biological SciencesPlant ScienceOpen Access
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Evolution of the wheat blast fungus through functional losses in a host specificity determinant

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Yoshihiro Inoue, Trinh Thi Phuong Vy, Kentaro Yoshida, Hokuto Asano et al.

Journal: ScienceYear: 2017Citations: 304

Genetic analysis of disease emergence In the 1980s, wheat crops began to fall to the fungal pathogen that causes blast disease. First seen in Brazil, wheat blast last year caused devastating crop losses in Bangladesh. Inoue et al. tracked down the shifting genetics that have allowed the emergence of...

Life SciencesAgricultural and Biological SciencesPlant ScienceOpen Access
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Improving grain yield, stress resilience and quality of bread wheat using large-scale genomics

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Philomin Juliana, Jesse Poland, Julio Huerta‐Espino, Sandesh Shrestha et al.

Journal: Nature GeneticsYear: 2019Citations: 276

Bread wheat improvement using genomic tools is essential for accelerating trait genetic gains. Here we report the genomic predictabilities of 35 key traits and demonstrate the potential of genomic selection for wheat end-use quality. We also performed a large genome-wide association study that ident...

Life SciencesAgricultural and Biological SciencesPlant Science
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Consequences and Mitigation Strategies of Abiotic Stresses in Wheat (Triticum aestivum L.) under the Changing Climate

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Akbar Hossain, Milan Skalický, Marián Brestič, Sagar Maitra et al.

Journal: AgronomyYear: 2021Citations: 252

Wheat is one of the world’s most commonly consumed cereal grains. During abiotic stresses, the physiological and biochemical alterations in the cells reduce growth and development of plants that ultimately decrease the yield of wheat. Therefore, novel approaches are needed for sustainable wheat prod...

Life SciencesAgricultural and Biological SciencesPlant ScienceOpen Access
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A Review of Microsatellite Markers and Their Applications in Rice Breeding Programs to Improve Blast Disease Resistance

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Gous Miah, Mohd Y. Rafii, Mohd Razi Ismail, Adam Puteh et al.

Journal: International Journal of Molecular SciencesYear: 2013Citations: 244

Over the last few decades, the use of molecular markers has played an increasing role in rice breeding and genetics. Of the different types of molecular markers, microsatellites have been utilized most extensively, because they can be readily amplified by PCR and the large amount of allelic variatio...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Multi-Omics Pipeline and Omics-Integration Approach to Decipher Plant’s Abiotic Stress Tolerance Responses

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Rajib Roychowdhury, Soumya Prakash Das, Amber Gupta, Parul Parihar et al.

Journal: GenesYear: 2023Citations: 234

The present day's ongoing global warming and climate change adversely affect plants through imposing environmental (abiotic) stresses and disease pressure. The major abiotic factors such as drought, heat, cold, salinity, etc., hamper a plant's innate growth and development, resulting in reduced yiel...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Marker-assisted backcrossing: a useful method for rice improvement

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Muhammad Mahmudul Hasan, Mohd Y. Rafii, Mohd Razi Ismail, Maziah Mahmood et al.

Journal: Biotechnology & Biotechnological EquipmentYear: 2015Citations: 225

generations, it is possible to recover the recurrent parent genotype using only two or three backcrosses. So far, many high yielding, biotic and abiotic stresses tolerance, quality and fragrance rice varieties have been developed in rice growing countries through MABC within the shortest timeframe. ...

Life SciencesAgricultural and Biological SciencesPlant ScienceOpen Access
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Back to the future: revisiting MAS as a tool for modern plant breeding

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Joshua N. Cobb, P. Biswas, John Damien Platten

Journal: Theoretical and Applied GeneticsYear: 2018Citations: 220

KEY MESSAGE: New models for integration of major gene MAS with modern breeding approaches stand to greatly enhance the reliability and efficiency of breeding, facilitating the leveraging of traditional genetic diversity. Genetic diversity is well recognised as contributing essential variation to cro...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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Genetic, Physiological, and Gene Expression Analyses Reveal That Multiple QTL Enhance Yield of Rice Mega-Variety IR64 under Drought

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Mallikarjuna Swamy B. P., Helal Uddin Ahmed, Amelia Henry, Ramil Mauleon et al.

Journal: PLoS ONEYear: 2013Citations: 191

BACKGROUND: Rice (Oryza sativa L.) is a highly drought sensitive crop, and most semi dwarf rice varieties suffer severe yield losses from reproductive stage drought stress. The genetic complexity of drought tolerance has deterred the identification of agronomically relevant quantitative trait loci (...

Life SciencesAgricultural and Biological SciencesPlant ScienceOpen Access
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High-resolution mapping of two rice brown planthopper resistance genes, Bph20(t) and Bph21(t), originating from Oryza minuta

Verified

Md Lutfor Rahman, Wenzhu Jiang, Sang‐Ho Chu, Yongli Qiao et al.

Journal: Theoretical and Applied GeneticsYear: 2009Citations: 184

Brown planthopper (BPH) is one of the most destructive insect pests of rice. Wild species of rice are a valuable source of resistance genes for developing resistant cultivars. A molecular marker-based genetic analysis of BPH resistance was conducted using an F(2) population derived from a cross betw...

Life SciencesAgricultural and Biological SciencesPlant Science
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Molecular Mapping of Reduced Plant Height Gene Rht24 in Bread Wheat

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Xiuling Tian, Weie Wen, Li Xie, Luping Fu et al.

Journal: Frontiers in Plant ScienceYear: 2017Citations: 165

Height is an important trait related to plant architecture and yield potential in bread wheat (Triticum aestivum L.). We previously identified a major quantitative trait locus (QTL) QPH.caas-6A flanked by simple sequence repeat markers Xbarc103 and Xwmc256 that reduced height by 8.0–10.4%. Here QPH....

Life SciencesAgricultural and Biological SciencesPlant ScienceOpen Access
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Salt Tolerance Improvement in Rice through Efficient SNP Marker-Assisted Selection Coupled with Speed-Breeding

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Md. Masud Rana, Takeshi Takamatsu, Marouane Baslam, Kentaro Kaneko et al.

Journal: International Journal of Molecular SciencesYear: 2019Citations: 159

Salinity critically limits rice metabolism, growth, and productivity worldwide. Improvement of the salt resistance of locally grown high-yielding cultivars is a slow process. The objective of this study was to develop a new salt-tolerant rice germplasm using speed-breeding. Here, we precisely introg...

Life SciencesBiochemistry, Genetics and Molecular BiologyGeneticsOpen Access
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