Rezwana Reaz, Md. Shamsuzzoha Bayzid, M. Sohel Rahman
Supertree methods construct trees on a set of taxa (species) combining many smaller trees on the overlapping subsets of the entire set of taxa. A 'quartet' is an unrooted tree over 4 taxa, hence the quartet-based supertree methods combine many 4-taxon unrooted trees into a single and coherent tree o...
M. Mahbub, Zahin Wahab, Rezwana Reaz, Mohammad Saifur Rahman et al.
Abstract Motivation Species tree estimation from genes sampled from throughout the whole genome is complicated due to the gene tree–species tree discordance. Incomplete lineage sorting (ILS) is one of the most frequent causes for this discordance, where alleles can coexist in populations for periods...
Mazharul Islam, Kowshika Sarker, Trisha Das, Rezwana Reaz et al.
BACKGROUND: Species tree estimation is frequently based on phylogenomic approaches that use multiple genes from throughout the genome. However, estimating a species tree from a collection of gene trees can be complicated due to the presence of gene tree incongruence resulting from incomplete lineage...
Faisal Bin Ashraf, Rezwana Reaz
Internet of Things (IoT) and Blockchain technologies have been utilized heavily in diverse domains, including remote patient monitoring (RPM). Expeditious development of wearable IoT medical devices with a variety of functionality, real-time sensory data from patients can be provided and further pro...
Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz et al.
Species tree estimation is frequently based on phylogenomic approaches that use multiple genes from throughout the genome. However, for a combination of reasons (ranging from sampling biases to more biological causes, as in gene birth and loss), gene trees are often incomplete, meaning that not all ...
Sharmin Akter Mim, Md Zarif-Ul-Alam, Rezwana Reaz, Md. Shamsuzzoha Bayzid et al.
MOTIVATION: With the recent breakthroughs in sequencing technology, phylogeny estimation at a larger scale has become a huge opportunity. For accurate estimation of large-scale phylogeny, substantial endeavor is being devoted in introducing new algorithms or upgrading current approaches. In this wor...
Jannatun Noor, Rizwanul Hoque Ratul, Md. Samiul Basher, Jarif Ahmed Soumik et al.
Md Mahir Shahriyar, Gourab Saha, Bishwajit Bhattacharjee, Rezwana Reaz
Network function virtualization is the key to developing elastically scalable and fault-tolerant network functions (e.g. load balancer, firewall etc.). By integrating NFV and SDN technologies, it is feasible to dynamically reroute traffic to new network function (NF) instances in the event of an NF ...
Sazan Mahbub, Shashata Sawmya, Arpita Saha, Rezwana Reaz et al.
Prottoy Saha, Md. Shamiul Islam, Tasnim Rahman, Adiba Shaira et al.
Mazharul Islam, Kowshika Sarker, Trisha Das, Rezwana Reaz et al.
Abstract Background Species tree estimation is frequently based on phylogenomic approaches that use multiple genes from throughout the genome. However, estimating a species tree from a collection of gene trees can be complicated due to the presence of gene tree incongruence resulting from incomplete...
Abdur Rafi, Ahmed Mahir Sultan Rumi, Sheikh Azizul Hakim, Sohaib et al.
Abstract Motivation Summary methods are becoming increasingly popular for species tree estimation from multi-locus data in the presence of gene tree discordance. Accurate Species TRee Algorithm (ASTRAL), a leading method in this class, solves the Maximum Quartet Support Species Tree problem within a...
Abdur Rafi, Ahmed Mahir Sultan Rumi, Sheikh Azizul Hakim, Sohaib et al.
Abstract Summary methods are becoming increasingly popular for species tree estimation from multi-locus data in the presence of gene tree discordance. ASTRAL, a leading method in this class, solves the Maximum Quartet Support Species Tree problem within a constrained solution space constructed from ...
M. Mahbub, Zahin Wahab, Rezwana Reaz, Mohammad Saifur Rahman et al.
Abstract Motivation Species tree estimation from genes sampled from throughout the whole genome is complicated due to the gene tree-species tree discordance . Incomplete lineage sorting (ILS) is one of the most frequent causes for this discordance, where alleles can coexist in populations for period...
Navid Bin Hasan, Avijit Biswas, Zahin Wahab, M. Mahbub et al.
Species tree estimation from genes sampled from throughout the whole genome is challenging because of gene tree discordance, often caused by incomplete lineage sorting (ILS). Quartet-based summary methods for estimating species trees from a collection of gene trees are becoming popular due to their ...